...one of the most highly
regarded and expertly designed C++ library projects in the
world.
— Herb Sutter and Andrei
Alexandrescu, C++
Coding Standards
It would be nice if every kind of numeric software could be written in C++ without loss of efficiency, but unless something can be found that achieves this without compromising the C++ type system it may be preferable to rely on Fortran, assembler or architecturespecific extensions (Bjarne Stroustrup).
This C++ library is directed towards scientific computing on the level of basic linear algebra constructions with matrices and vectors and their corresponding abstract operations. The primary design goals were:
Another intention was to evaluate, if the abstraction penalty resulting from the use of such matrix and vector classes is acceptable.
The development of this library was guided by a couple of similar efforts:
BLAS seems to be the most widely used library for basic linear algebra constructions, so it could be called a defacto standard. Its interface is procedural, the individual functions are somewhat abstracted from simple linear algebra operations. Due to the fact that is has been implemented using Fortran and its optimizations, it also seems to be one of the fastest libraries available. As we decided to design and implement our library in an objectoriented way, the technical approaches are distinct. However anyone should be able to express BLAS abstractions in terms of our library operators and to compare the efficiency of the implementations.
Blitz++ is an impressive library implemented in C++. Its main design seems to be oriented towards multidimensional arrays and their associated operators including tensors. The author of Blitz++ states, that the library achieves performance on par or better than corresponding Fortran code due to his implementation technique using expression templates and template metaprograms. However we see some reasons, to develop an own design and implementation approach. We do not know whether anybody tries to implement traditional linear algebra and other numerical algorithms using Blitz++. We also presume that even today Blitz++ needs the most advanced C++ compiler technology due to its implementation idioms. On the other hand, Blitz++ convinced us, that the use of expression templates is mandatory to reduce the abstraction penalty to an acceptable limit.
POOMA's design goals seem to parallel Blitz++'s in many parts . It extends Blitz++'s concepts with classes from the domains of partial differential equations and theoretical physics. The implementation supports even parallel architectures.
MTL is another approach supporting basic linear algebra operations in C++. Its design mainly seems to be influenced by BLAS and the C++ Standard Template Library. We share the insight that a linear algebra library has to provide functionality comparable to BLAS. On the other hand we think, that the concepts of the C++ standard library have not yet been proven to support numerical computations as needed. As another difference MTL currently does not seem to use expression templates. This may result in one of two consequences: a possible loss of expressiveness or a possible loss of performance.
The usage of mathematical notation may ease the development of scientific algorithms. So a C++ library implementing basic linear algebra concepts carefully should overload selected C++ operators on matrix and vector classes.
We decided to use operator overloading for the following primitives:
Description  Operator 

Indexing of vectors and matrices  vector::operator(size_t i); 
Assignment of vectors and matrices  vector::operator = (const vector_expression &); 
Unary operations on vectors and matrices  vector_expression operator  (const vector_expression
&); 
Binary operations on vectors and matrices  vector_expression operator + (const vector_expression
&, const vector_expression &); 
Multiplication of vectors and matrices with a scalar  vector_expression operator * (const scalar_expression
&, const vector_expression &); 
We decided to use no operator overloading for the following other primitives:
Description  Function 

Left multiplication of vectors with a matrix  vector_expression
prod< vector_type > (const
matrix_expression &, const vector_expression &); 
Right multiplication of vectors with a matrix  vector_expression
prod< vector_type > (const
vector_expression &, const matrix_expression &); 
Multiplication of matrices  matrix_expression
prod< matrix_type > (const
matrix_expression &, const matrix_expression &); 
Inner product of vectors  scalar_expression inner_prod (const vector_expression
&, const vector_expression &); 
Outer product of vectors  matrix_expression outer_prod (const vector_expression
&, const vector_expression &); 
Transpose of a matrix  matrix_expression trans (const matrix_expression
&); 
To achieve the goal of efficiency for numerical computing, one has to overcome two difficulties in formulating abstractions with C++, namely temporaries and virtual function calls. Expression templates solve these problems, but tend to slow down compilation times.
Abstract formulas on vectors and matrices normally compose a couple of unary and binary operations. The conventional way of evaluating such a formula is first to evaluate every leaf operation of a composition into a temporary and next to evaluate the composite resulting in another temporary. This method is expensive in terms of time especially for small and space especially for large vectors and matrices. The approach to solve this problem is to use lazy evaluation as known from modern functional programming languages. The principle of this approach is to evaluate a complex expression element wise and to assign it directly to the target.
Two interesting and dangerous facts result:
One may get serious side effects using element wise evaluation on vectors or matrices. Consider the matrix vector product x = A x. Evaluation of A_{1}x and assignment to x_{1} changes the right hand side, so that the evaluation of A_{2}x returns a wrong result. In this case there are aliases of the elements x_{n} on both the left and right hand side of the assignment.
Our solution for this problem is to
evaluate the right hand side of an assignment into a temporary and
then to assign this temporary to the left hand side. To allow
further optimizations, we provide a corresponding member function
for every assignment operator and also a
noalias
syntax.
By using this syntax a programmer can confirm, that the left and right hand sides of an
assignment are independent, so that element wise evaluation and
direct assignment to the target is safe.
The computational complexity may be unexpectedly large under certain cirumstances. Consider the chained matrix vector product A (B x). Conventional evaluation of A (B x) is quadratic. Deferred evaluation of B x_{i} is linear. As every element B x_{i} is needed linearly depending of the size, a completely deferred evaluation of the chained matrix vector product A (B x) is cubic. In such cases one needs to reintroduce temporaries in the expression.
Lazy expression evaluation normally leads to the definition of a class hierarchy of terms. This results in the usage of dynamic polymorphism to access single elements of vectors and matrices, which is also known to be expensive in terms of time. A solution was found a couple of years ago independently by David Vandervoorde and Todd Veldhuizen and is commonly called expression templates. Expression templates contain lazy evaluation and replace dynamic polymorphism with static, i.e. compile time polymorphism. Expression templates heavily depend on the famous BartonNackman trick, also coined 'curiously defined recursive templates' by Jim Coplien.
Expression templates form the base of our implementation.
It is also a well known fact, that expression templates challenge currently available compilers. We were able to significantly reduce the amount of needed expression templates using the BartonNackman trick consequently.
We also decided to support a dual conventional implementation
(i.e. not using expression templates) with extensive bounds and
type checking of vector and matrix operations to support the
development cycle. Switching from debug mode to release mode is
controlled by the NDEBUG
preprocessor symbol of
<cassert>
.
Every C++ library supporting linear algebra will be measured against the longstanding Fortran package BLAS. We now describe how BLAS calls may be mapped onto our classes.
The page Overview of Matrix and Vector Operations gives a short summary of the most used operations on vectors and matrices.
BLAS Call  Mapped Library Expression  Mathematical Description  Comment 

sasum OR dasum 
norm_1 (x) 
sum x_{i}  Computes the l_{1} (sum) norm of a real vector. 
scasum OR dzasum 
real (sum (v)) + imag (sum (v)) 
sum re(x_{i}) + sum im(x_{i})  Computes the sum of elements of a complex vector. 
_nrm2 
norm_2 (x) 
sqrt (sum x_{i}^{2} )  Computes the l_{inf} (euclidean) norm of a vector. 
i_amax 
norm_inf (x) 
max x_{i}  Computes the l_{2} (maximum) norm of a vector. BLAS computes the index of the first element having this value. 
_dot 
inner_prod (x, y) or

x^{T} y or x^{H} y 
Computes the inner product of two vectors. BLAS implements certain loop unrollment. 
dsdot 
a + prec_inner_prod (x, y) 
a + x^{T} y  Computes the inner product in double precision. 
_copy 
x = y 
x < y  Copies one vector to another. BLAS implements certain loop unrollment. 
_swap 
swap (x, y) 
x <> y  Swaps two vectors. BLAS implements certain loop unrollment. 
_scal 
x *= a 
x < a x  Scales a vector. BLAS implements certain loop unrollment. 
_axpy 
y += a * x 
y < a x + y  Adds a scaled vector. BLAS implements certain loop unrollment. 
_rot 
t.assign (a * x + b * y), 
(x, y) < (a x + b y, b x + a y)  Applies a plane rotation. 
_rotg 
(a, b) < (? a / sqrt (a^{2} + b^{2}), ? b / sqrt (a^{2} + b^{2})) or (1, 0) < (0, 0) 
Constructs a plane rotation. 
BLAS Call  Mapped Library Expression  Mathematical Description  Comment 

_t_mv 
x = prod (A, x) or or

x < A x or x < A^{T} x or x < A^{H} x 
Computes the product of a matrix with a vector. 
_t_sv 
y = solve (A, x, tag) orinplace_solve (A, x, tag) ory = solve (trans (A), x, tag) orinplace_solve (trans (A), x, tag) ory = solve (herm (A), x, tag) orinplace_solve (herm (A), x, tag) 
y < A^{1} x
or x < A^{1} x or y < A^{T}^{1} x or x < A^{T}^{1} x or y < A^{H}^{1} x or x < A^{H}^{1} x 
Solves a system of linear equations with triangular form, i.e. A is triangular. 
_g_mv 
y = a * prod (A, x) + b * y or or

y < a A x + b y or y < a A^{T} x + b y y < a A^{H} x + b y 
Adds the scaled product of a matrix with a vector. 
_g_r 
A += a * outer_prod (x, y) or

A < a x y^{T} + A
or A < a x y^{H} + A 
Performs a rank 1 update. 
_s_r 
A += a * outer_prod (x, x) or

A < a x x^{T} + A
or A < a x x^{H} + A 
Performs a symmetric or hermitian rank 1 update. 
_s_r2 
A += a * outer_prod (x, y) + or

A < a x y^{T} + a y
x^{T} + A or A < a x y^{H} + a^{} y x^{H} + A 
Performs a symmetric or hermitian rank 2 update. 
BLAS Call  Mapped Library Expression  Mathematical Description  Comment 

_t_mm 
B = a * prod (A, B) orB = a * prod (trans (A), B) orB = a * prod (A, trans (B)) orB = a * prod (trans (A), trans (B)) orB = a * prod (herm (A), B) orB = a * prod (A, herm (B)) orB = a * prod (herm (A), trans (B)) orB = a * prod (trans (A), herm (B)) orB = a * prod (herm (A), herm (B)) 
B < a op (A) op (B) with op (X) = X or op (X) = X^{T} or op (X) = X^{H} 
Computes the scaled product of two matrices. 
_t_sm 
C = solve (A, B, tag) orinplace_solve (A, B, tag) orC = solve (trans (A), B, tag) or or or

C < A^{1} B
or B < A^{1} B or C < A^{T}^{1} B or B < A^{1} B or C < A^{H}^{1} B or B < A^{H}^{1} B 
Solves a system of linear equations with triangular form, i.e. A is triangular. 
_g_mm 
C = a * prod (A, B) + b * C orC = a * prod (trans (A), B) + b * C orC = a * prod (A, trans (B)) + b * C orC = a * prod (trans (A), trans (B)) + b * C orC = a * prod (herm (A), B) + b * C orC = a * prod (A, herm (B)) + b * C orC = a * prod (herm (A), trans (B)) + b * C orC = a * prod (trans (A), herm (B)) + b * C orC = a * prod (herm (A), herm (B)) + b * C 
C < a op (A) op (B) + b C with op (X) = X or op (X) = X^{T} or op (X) = X^{H} 
Adds the scaled product of two matrices. 
_s_rk 
B = a * prod (A, trans (A)) + b * B orB = a * prod (trans (A), A) + b * B orB = a * prod (A, herm (A)) + b * B orB = a * prod (herm (A), A) + b * B 
B < a A A^{T} + b B
or B < a A^{T} A + b B or B < a A A^{H} + b B or B < a A^{H} A + b B 
Performs a symmetric or hermitian rank k update. 
_s_r2k 
C = a * prod (A, trans (B)) + orC = a * prod (trans (A), B) + orC = a * prod (A, herm (B)) + orC = a * prod (herm (A), B) + 
C < a A B^{T} + a B
A^{T} + b C or C < a A^{T} B + a B^{T} A + b C or C < a A B^{H} + a^{} B A^{H} + b C or C < a A^{H} B + a^{} B^{H} A + b C 
Performs a symmetric or hermitian rank 2 k update. 
uBLAS supports may different storage layouts. The full details can be
found at the Overview of Types. Most types like
vector<double>
and matrix<double>
are
by default compatible to C arrays, but can also be configured to contain
FORTAN compatible data.
For compatibility reasons we provide array like indexing for vectors and matrices. For some types (hermitian, sparse etc) this can be expensive for matrices due to the needed temporary proxy objects.
uBLAS uses STL compatible allocators for the allocation of the storage required for it's containers.
The following tables contain results of one of our benchmarks.
This benchmark compares a native C implementation ('C array') and
some library based implementations. The safe variants based on the
library assume aliasing, the fast variants do not use temporaries
and are functionally equivalent to the native C implementation.
Besides the generic vector and matrix classes the benchmark
utilizes special classes c_vector
and
c_matrix
, which are intended to avoid every overhead
through genericity.
The benchmark program bench1 was compiled with GCC 4.0 and run on an Athlon 64 3000+. Times are scales for reasonable precision by running bench1 100.
First we comment the results for double vectors and matrices of dimension 3 and 3 x 3, respectively.
Comment  

inner_prod  C array  0.61  782  Some abstraction penalty 
c_vector  0.86  554  
vector<unbounded_array>  1.02  467  
vector + vector  C array  0.51  1122  Abstraction penalty: factor 2 
c_vector fast  1.17  489  
vector<unbounded_array> fast  1.32  433  
c_vector safe  2.02  283  
vector<unbounded_array> safe  6.95  82  
outer_prod  C array  0.59  872  Some abstraction penalty 
c_matrix, c_vector fast  0.88  585  
matrix<unbounded_array>, vector<unbounded_array> fast  0.90  572  
c_matrix, c_vector safe  1.66  310  
matrix<unbounded_array>, vector<unbounded_array> safe  2.95  175  
prod (matrix, vector)  C array  0.64  671  No significant abstraction penalty 
c_matrix, c_vector fast  0.70  613  
matrix<unbounded_array>, vector<unbounded_array> fast  0.79  543  
c_matrix, c_vector safe  0.95  452  
matrix<unbounded_array>, vector<unbounded_array> safe  2.61  164  
matrix + matrix  C array  0.75  686  No significant abstraction penalty 
c_matrix fast  0.99  520  
matrix<unbounded_array> fast  1.29  399  
c_matrix safe  1.7  303  
matrix<unbounded_array> safe  3.14  164  
prod (matrix, matrix)  C array  0.94  457  No significant abstraction penalty 
c_matrix fast  1.17  367  
matrix<unbounded_array> fast  1.34  320  
c_matrix safe  1.56  275  
matrix<unbounded_array> safe  2.06  208 
We notice a two fold performance loss for small vectors and matrices: first the general abstraction penalty for using classes, and then a small loss when using the generic vector and matrix classes. The difference w.r.t. alias assumptions is also significant.
Next we comment the results for double vectors and matrices of dimension 100 and 100 x 100, respectively.
Operation  Implementation  Elapsed [s]  MFLOP/s  Comment 

inner_prod  C array  0.64  889  No significant abstraction penalty 
c_vector  0.66  862  
vector<unbounded_array>  0.66  862  
vector + vector  C array  0.64  894  No significant abstraction penalty 
c_vector fast  0.66  867  
vector<unbounded_array> fast  0.66  867  
c_vector safe  1.14  501  
vector<unbounded_array> safe  1.23  465  
outer_prod  C array  0.50  1144  No significant abstraction penalty 
c_matrix, c_vector fast  0.71  806  
matrix<unbounded_array>, vector<unbounded_array> fast  0.57  1004  
c_matrix, c_vector safe  1.91  300  
matrix<unbounded_array>, vector<unbounded_array> safe  0.89  643  
prod (matrix, vector)  C array  0.65  876  No significant abstraction penalty 
c_matrix, c_vector fast  0.65  876  
matrix<unbounded_array>, vector<unbounded_array> fast  0.66  863  
c_matrix, c_vector safe  0.66  863  
matrix<unbounded_array>, vector<unbounded_array> safe  0.66  863  
matrix + matrix  C array  0.96  596  No significant abstraction penalty 
c_matrix fast  1.21  473  
matrix<unbounded_array> fast  1.00  572  
c_matrix safe  2.44  235  
matrix<unbounded_array> safe  1.30  440  
prod (matrix, matrix)  C array  0.70  813  No significant abstraction penalty 
c_matrix fast  0.73  780  
matrix<unbounded_array> fast  0.76  749  
c_matrix safe  0.75  759  
matrix<unbounded_array> safe  0.76  749 
For larger vectors and matrices the general abstraction penalty for using classes seems to decrease, the small loss when using generic vector and matrix classes seems to remain. The difference w.r.t. alias assumptions remains visible, too.
Copyright (©) 20002002 Joerg Walter, Mathias Koch
Use, modification and distribution are subject to the
Boost Software License, Version 1.0.
(See accompanying file LICENSE_1_0.txt
or copy at
http://www.boost.org/LICENSE_1_0.txt
).